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OpenWalnut
1.5.0dev
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Computes a distance map from an anatomy dataset and renders it as isosurface. More...
#include <WMDistanceMapIsosurface.h>
Inheritance diagram for WMDistanceMapIsosurface:
Collaboration diagram for WMDistanceMapIsosurface:Public Member Functions | |
| WMDistanceMapIsosurface () | |
| Standard constructor. More... | |
| ~WMDistanceMapIsosurface () | |
| Destructor. More... | |
| virtual std::shared_ptr< WModule > | factory () const |
| Due to the prototype design pattern used to build modules, this method returns a new instance of this method. More... | |
| virtual const char ** | getXPMIcon () const |
| Get the icon for this module in XPM format. More... | |
Public Member Functions inherited from WModuleContainer | |
| WModuleContainer (std::string name="Unnamed Module Container", std::string description="Used as container for several modules.") | |
| Constructor. More... | |
| virtual | ~WModuleContainer () |
| Destructor. More... | |
| virtual void | add (std::shared_ptr< WModule > module, bool run=true) |
| Add a module to this container and start it. More... | |
| virtual WModule::SPtr | createAndAdd (std::string name) |
| Convenience method to create a module instance with a given name and automatically add it to the container. More... | |
| virtual void | remove (std::shared_ptr< WModule > module) |
| Remove the given module from this container if it is associated with it. More... | |
| virtual void | removeAll () |
| Removes all modules from this container. More... | |
| virtual void | stop () |
| Stops all modules inside this container. More... | |
| virtual const std::string | getName () const |
| Gives back the name of this module. More... | |
| virtual const std::string | getDescription () const |
| Gives back a description of this module. More... | |
| virtual void | addDefaultNotifier (MODULE_SIGNAL signal, t_ModuleErrorSignalHandlerType notifier) |
| Add a specified notifier to the list of default notifiers which get connected to each added module. More... | |
| virtual void | addDefaultNotifier (MODULE_SIGNAL signal, t_ModuleGenericSignalHandlerType notifier) |
| Add a specified notifier to the list of default notifiers which get connected to each added module. More... | |
| virtual void | addDefaultNotifier (MODULE_CONNECTOR_SIGNAL signal, t_GenericSignalHandlerType notifier) |
| Add a specified notifier to the list of default notifiers which get connected to each added module. More... | |
| virtual std::shared_ptr< WModule > | applyModule (std::shared_ptr< WModule > applyOn, std::string what, bool tryOnly=false) |
| Function combines two modules. More... | |
| virtual std::shared_ptr< WModule > | applyModule (std::shared_ptr< WModule > applyOn, std::shared_ptr< WModule > prototype) |
| Function combines two modules. More... | |
| WBatchLoader::SPtr | loadDataSets (std::vector< std::string > filenames, bool suppressColormaps=false) |
| Load specified datasets. More... | |
| WBatchLoader::SPtr | loadDataSetsSynchronously (std::vector< std::string > filenames, bool suppressColormaps=false) |
| Loads the specified files synchronously. More... | |
| void | addPendingThread (std::shared_ptr< WThreadedRunner > thread) |
| Add the specified thread to the list of pending jobs. More... | |
| void | finishedPendingThread (std::shared_ptr< WThreadedRunner > thread) |
| The specified thread has finished and does not longer depend upon this container instance. More... | |
| void | setCrashIfModuleCrashes (bool crashIfCrashed=true) |
| Sets a flag denoting whether the container (which also is a module) should be marked as "crashed" if a nested module crashes. More... | |
| DataModuleListType | getDataModules () |
| Returns a vector of pointers to the loaded data modules in the container. More... | |
| ModuleSharedContainerType::ReadTicket | getModules () const |
| Method returns a read ticket allowing read-access to the list of modules inside the container. More... | |
| ModuleVectorType | getModules (std::string name) const |
| Queries the container to find all modules with a given name. More... | |
| WCombinerTypes::WCompatiblesList | getPossibleConnections (std::shared_ptr< WModule > module) |
| This method creates a list of combiner instances, for each possible connection that can be made between the specified module and the module currently inside the container. More... | |
Public Member Functions inherited from WModule | |
| WModule () | |
| Constructs a new WModule instance. More... | |
| virtual | ~WModule () |
| Destructor. More... | |
| const InputConnectorList & | getInputConnectors () const |
| Gives back input connectors. More... | |
| std::shared_ptr< WModuleInputConnector > | getInputConnector (std::string name) |
| Finds the named connector for the module. More... | |
| std::shared_ptr< WModuleInputConnector > | findInputConnector (std::string name) |
| Finds the named connector for the module. More... | |
| const OutputConnectorList & | getOutputConnectors () const |
| Gives back output connectors. More... | |
| std::shared_ptr< WModuleOutputConnector > | getOutputConnector (std::string name) |
| Finds the named connector for the module. More... | |
| std::shared_ptr< WModuleOutputConnector > | findOutputConnector (std::string name) |
| Finds the named connector for the module. More... | |
| std::shared_ptr< WModuleConnector > | getConnector (std::string name) |
| Finds the named connector for the module. More... | |
| std::shared_ptr< WModuleConnector > | findConnector (std::string name) |
| Finds the named connector for the module. More... | |
| std::shared_ptr< WProperties > | getProperties () const |
| Return a pointer to the properties object of the module. More... | |
| std::shared_ptr< WProperties > | getInformationProperties () const |
| Return a pointer to the information properties object of the module. More... | |
| const WBoolFlag & | isInitialized () const |
| Determines whether the module instance is properly initialized. More... | |
| const WBoolFlag & | isUseable () const |
| Checks whether the module instance is ready to be used. More... | |
| const WBoolFlag & | isAssociated () const |
| Checks whether this module is associated with an container. More... | |
| const WBoolFlag & | isReady () const |
| Checks whether this module is ready. More... | |
| const WBoolFlag & | isReadyOrCrashed () const |
| This is the logical or of isReady and isCrashed. More... | |
| const WBoolFlag & | isRunning () const |
| Returns a flag denoting whether the thread currently is running or nor. More... | |
| void | waitRestored () |
| This method waits for the module to be restored completely. More... | |
| bool | isRestoreNeeded () const |
| Check whether this module is in restore mode. More... | |
| void | setRestoreNeeded (bool restore=true) |
| Change the restore mode. More... | |
| void | reportRestoreComplete () |
| Called by loaders to tell the module that loading has been completed. More... | |
| std::shared_ptr< WModuleContainer > | getAssociatedContainer () const |
| The container this module is associated with. More... | |
| virtual boost::signals2::connection | subscribeSignal (MODULE_SIGNAL signal, t_ModuleGenericSignalHandlerType notifier) |
| Connects a specified notify function with a signal this module instance is offering. More... | |
| virtual boost::signals2::connection | subscribeSignal (MODULE_SIGNAL signal, t_ModuleErrorSignalHandlerType notifier) |
| Connects a specified notify function with a signal this module instance is offering. More... | |
| virtual std::shared_ptr< WProgressCombiner > | getRootProgressCombiner () |
| Gets the modules base progress. More... | |
| virtual MODULE_TYPE | getType () const |
| Gets the type of the module. More... | |
| void | disconnect () |
| Completely disconnects all connected connectors of this module. More... | |
| WCombinerTypes::WDisconnectList | getPossibleDisconnections () |
| Gives a list of all WDisconnectCombiners possible. More... | |
| boost::filesystem::path | getLocalPath () const |
| Returns the local path of the module. More... | |
| boost::filesystem::path | getLibPath () const |
| Returns the absolute path to the library containing this module. More... | |
| std::string | getPackageName () const |
| Returns the name of the package the module belongs to, The package name basically is the name of the library containing this and maybe other modules. More... | |
| bool | isDeprecated () const |
| Checks whether the module was marked as deprecated. More... | |
| std::string | getDeprecationMessage () const |
| Queries the deprecation message of a module if specified. More... | |
| virtual WModuleMetaInformation::ConstSPtr | getMetaInformation () const |
| The meta information of this module. More... | |
| const std::string & | getUUID () const |
| Get the UUID of the module instance. More... | |
| WPropString | getRuntimeName () const |
| Returns the name the user has given this module. More... | |
| const WRequirement * | checkRequirements () const |
| This method checks whether all the requirements of the module are complied. More... | |
| virtual boost::signals2::connection | subscribeSignal (THREAD_SIGNAL signal, t_ThreadErrorSignalHandlerType notifier) |
| Connects a specified notify function with a signal this thread instance is offering. More... | |
Public Member Functions inherited from WThreadedRunner | |
| WThreadedRunner () | |
| Default constructor. More... | |
| virtual | ~WThreadedRunner () |
| Destructor. More... | |
| virtual void | run () |
| Run thread. More... | |
| void | run (THREADFUNCTION f) |
| Run thread. More... | |
| void | wait (bool requestFinish=false) |
| Wait for the thread to be finished. More... | |
| virtual void | requestStop () |
| This method's purpose is to request a stop without waiting for it. More... | |
| virtual boost::signals2::connection | subscribeSignal (THREAD_SIGNAL signal, t_ThreadErrorSignalHandlerType notifier) |
| Connects a specified notify function with a signal this thread instance is offering. More... | |
| const WBoolFlag & | isCrashed () const |
| Checks whether this thread has been crashed. More... | |
| const std::string & | getCrashMessage () const |
| Get the message of the exception finally causing the crash. More... | |
| void | setThreadName (std::string name) |
| Set the name of the thread. More... | |
| std::string | getThreadName () const |
| Returns the current thread name. More... | |
Public Member Functions inherited from WPrototyped | |
| WPrototyped () | |
| Default constructor. More... | |
| virtual | ~WPrototyped () |
| Destructor. More... | |
| template<typename T > | |
| bool | isA () |
| Checks whether the actual prototype has the specified runtime type. More... | |
Protected Member Functions | |
| virtual void | moduleMain () |
| Entry point after loading the module. More... | |
| virtual void | connectors () |
| Initialize the connectors this module is using. More... | |
| virtual void | requirements () |
| Initialize requirements for this module. More... | |
| virtual void | activate () |
| Callback for m_active. More... | |
Protected Member Functions inherited from WModuleContainer | |
| virtual void | moduleError (std::shared_ptr< WModule > module, const WException &exception) |
| This method is called whenever a module inside the container crashes. More... | |
Protected Member Functions inherited from WModule | |
| void | threadMain () |
| Thread entry point. More... | |
| virtual void | onThreadException (const WException &e) |
| This method is called if an exception was caught, which came from the custom thread code. More... | |
| void | setAssociatedContainer (std::shared_ptr< WModuleContainer > container) |
| Sets the container this module is associated with. More... | |
| virtual void | properties () |
| Initialize properties in this function. More... | |
| virtual std::string | deprecated () const |
| This function allows module programmers to mark their modules deprecated in a user-friendly way. More... | |
| void | initialize () |
| Manages initialization. More... | |
| virtual void | cleanup () |
| Called whenever the module should shutdown. More... | |
| void | addConnector (std::shared_ptr< WModuleInputConnector > con) |
| Adds the specified connector to the list of inputs. More... | |
| void | addConnector (std::shared_ptr< WModuleOutputConnector > con) |
| Adds the specified connector to the list of outputs. More... | |
| void | removeConnectors () |
| Removes all connectors properly. More... | |
| virtual const t_GenericSignalHandlerType | getSignalHandler (MODULE_CONNECTOR_SIGNAL signal) |
| Gives the signal handler function responsible for a given signal. More... | |
| virtual void | notifyConnectionEstablished (std::shared_ptr< WModuleConnector > here, std::shared_ptr< WModuleConnector > there) |
| Gets called whenever a connector gets connected to the specified input. More... | |
| virtual void | notifyConnectionClosed (std::shared_ptr< WModuleConnector > here, std::shared_ptr< WModuleConnector > there) |
| Gets called whenever a connection between a remote and local connector gets closed. More... | |
| virtual void | notifyDataChange (std::shared_ptr< WModuleConnector > input, std::shared_ptr< WModuleConnector > output) |
| Gets called when the data on one input connector changed. More... | |
| void | ready () |
| Call this whenever your module is ready and can react on property changes. More... | |
| wlog::WStreamedLogger | infoLog () const |
| Logger instance for comfortable info logging. More... | |
| wlog::WStreamedLogger | debugLog () const |
| Logger instance for comfortable debug logging. More... | |
| wlog::WStreamedLogger | warnLog () const |
| Logger instance for comfortable warning- logs. More... | |
| wlog::WStreamedLogger | errorLog () const |
| Logger instance for comfortable error logging. More... | |
| void | setLocalPath (boost::filesystem::path path) |
| Sets the local module path. More... | |
| void | setLibPath (boost::filesystem::path path) |
| Set the path to the library which contains this module. More... | |
| void | setPackageName (std::string name) |
| Set the package name. More... | |
Protected Member Functions inherited from WThreadedRunner | |
| virtual void | notifyStop () |
| Gets called when the thread should be stopped. More... | |
| void | yield () const |
| Give remaining execution timeslice to another thread. More... | |
| void | sleep (const int32_t t) const |
| Sets thread asleep. More... | |
| void | msleep (const int32_t t) const |
| Sets thread asleep. More... | |
| void | waitForStop () |
| Let the thread sleep until a stop request was given. More... | |
| void | handleDeadlyException (const WException &e, std::string sender="WThreadedRunner") |
| Handle the specified exception which was not caught in the thread, which basically means the thread has crashed. More... | |
Private Attributes | |
| WPropDouble | m_isoValueProp |
| Property holding the value for the distance. More... | |
| WPropInt | m_opacityProp |
| Property holding the value for the opacity of the surface. More... | |
| WPropBool | m_useTextureProp |
| Property indicating whether to use texturing with scalar data sets. More... | |
| WPropColor | m_surfaceColorProp |
| Property indicating which color to use for non-textured surface. More... | |
| std::shared_ptr< WModuleInputForwardData< WDataSetScalar > > | m_input |
| Input connector required by this module. More... | |
| std::shared_ptr< WModuleOutputForwardData< WDataSetScalar > > | m_output |
| Connector to provide the distance map to other modules. More... | |
| std::shared_ptr< WModule > | m_isosurfaceModule |
| The isosurface module used in this container. More... | |
| std::shared_ptr< WModule > | m_distanceMapModule |
| The distance map module used in this container. More... | |
Friends | |
| class | WMDistanceMapIsosurfaceTest |
| Only UnitTests may be friends. More... | |
Additional Inherited Members | |
Public Types inherited from WModuleContainer | |
| typedef std::vector< std::shared_ptr< WModule > > | ModuleVectorType |
| A vector of modules. More... | |
| typedef std::set< std::shared_ptr< WModule > > | ModuleContainerType |
| For shortening: a type defining a shared vector of WModule pointers. More... | |
| typedef WSharedObject< ModuleContainerType > | ModuleSharedContainerType |
| The alias for a shared container. More... | |
| typedef ModuleContainerType::const_iterator | ModuleConstIterator |
| The const iterator type of the container. More... | |
| typedef ModuleContainerType::iterator | ModuleIterator |
| The iterator type of the container. More... | |
| typedef std::set< std::shared_ptr< WDataModule > > | DataModuleListType |
| Simple type for WDataModule pointer lists. More... | |
Public Types inherited from WModule | |
| typedef std::vector< std::shared_ptr< WModuleInputConnector > > | InputConnectorList |
| The type for the list of input connectors. More... | |
| typedef std::vector< std::shared_ptr< WModuleOutputConnector > > | OutputConnectorList |
| The type for the list of output connectors. More... | |
| typedef std::shared_ptr< WModule > | SPtr |
| Shared pointer to a WModule. More... | |
| typedef std::shared_ptr< const WModule > | ConstSPtr |
| Shared pointer to a const WModule. More... | |
Public Types inherited from WThreadedRunner | |
| typedef std::shared_ptr< WThreadedRunner > | SPtr |
| Abbreviation to a shared_ptr to this type. More... | |
| typedef std::shared_ptr< const WThreadedRunner > | ConstSPtr |
| Abbreviation to a const shared_ptr to this type. More... | |
| typedef boost::function< void(void) > | THREADFUNCTION |
| Type used for simple thread functions. More... | |
Static Public Member Functions inherited from WModule | |
| static SPtr | findByUUID (std::string uuid) |
| Find a module instance by UUID. More... | |
Static Public Member Functions inherited from WThreadedRunner | |
| static void | setThisThreadName (std::string name) |
| Static function to set the name of the calling thread. More... | |
Protected Types inherited from WModule | |
| typedef std::vector< WRequirement * > | Requirements |
| The type of the requirement list. More... | |
Protected Attributes inherited from WModuleContainer | |
| ModuleSharedContainerType | m_modules |
| The modules associated with this container. More... | |
| std::string | m_name |
| Name of the module. More... | |
| std::string | m_description |
| Description of the module. More... | |
| std::shared_mutex | m_errorNotifiersLock |
| Lock for error notifiers set. More... | |
| std::list< t_ModuleErrorSignalHandlerType > | m_errorNotifiers |
| The error notifiers connected to added modules by default. More... | |
| std::shared_mutex | m_readyNotifiersLock |
| Lock for ready notifiers set. More... | |
| std::list< t_ModuleGenericSignalHandlerType > | m_readyNotifiers |
| The ready notifiers connected to added modules by default. More... | |
| std::shared_mutex | m_associatedNotifiersLock |
| Lock for associated notifiers set. More... | |
| std::list< t_ModuleGenericSignalHandlerType > | m_associatedNotifiers |
| The notifiers connected to added modules by default and fired whenever the module got associated. More... | |
| std::shared_mutex | m_removedNotifiersLock |
| Lock for remove-notifiers set. More... | |
| std::list< t_ModuleGenericSignalHandlerType > | m_removedNotifiers |
| The notifiers connected to added modules by default and fired whenever the module got removed again. More... | |
| std::shared_mutex | m_connectorNotifiersLock |
| Lock for connector-notifiers set. More... | |
| std::list< t_GenericSignalHandlerType > | m_connectorEstablishedNotifiers |
| The notifiers connected to added modules by default and fired whenever the module connectors got connected. More... | |
| std::list< t_GenericSignalHandlerType > | m_connectorClosedNotifiers |
| The notifiers connected to added modules by default and fired whenever the module connectors got disconnected. More... | |
| std::set< std::shared_ptr< WThreadedRunner > > | m_pendingThreads |
| Set of all threads that currently depend upon this container. More... | |
| std::shared_mutex | m_pendingThreadsLock |
| Lock for m_pendingThreads. More... | |
| bool | m_crashIfModuleCrashes |
| This flag denotes whether the whole container should be marked as crashed if one of the contained modules crashes. More... | |
Protected Attributes inherited from WModule | |
| std::shared_ptr< WProperties > | m_properties |
| The property object for the module. More... | |
| std::shared_ptr< WProperties > | m_infoProperties |
| The property object for the module containing only module whose purpose is "PV_PURPOSE_INFORMNATION". More... | |
| std::shared_ptr< WProgressCombiner > | m_progress |
| Progress indicator used as parent for all progress' of this module. More... | |
| WBoolFlag | m_initialized |
| True if everything is initialized and ready to be used. More... | |
| WBoolFlag | m_isAssociated |
| True if container got associated with this flag. More... | |
| WBoolFlag | m_isUsable |
| True if associated && initialized. More... | |
| WBoolFlag | m_isReady |
| True if ready() was called. More... | |
| WBoolFlag | m_isReadyOrCrashed |
| It is true whenever m_isReady or WThreadedRunner::m_isCrashed is true. More... | |
| WBoolFlag | m_isRunning |
| True if the module currently is running. More... | |
| WBoolFlag | m_isLoadFinished |
| Flag to denote whether the module container and the project loader have finished their work. More... | |
| bool | m_restoreMode |
| Flag denoting the current restore mode. More... | |
| std::shared_ptr< WProgress > | m_readyProgress |
| Progress indicator for the "ready" state. More... | |
| WConditionSet | m_moduleState |
| The internal state of the module. More... | |
| std::shared_ptr< WModuleContainer > | m_container |
| The container this module belongs to. More... | |
| InputConnectorList | m_inputConnectors |
| Set of input connectors associated with this module. More... | |
| OutputConnectorList | m_outputConnectors |
| Set of output connectors associated with this module. More... | |
| WPropBool | m_active |
| True whenever the module should be active. More... | |
| WPropString | m_runtimeName |
| This property holds a user specified name for the current module instance. More... | |
| boost::filesystem::path | m_localPath |
| The path where the module binary resides in. More... | |
| boost::filesystem::path | m_libPath |
| The absolute path to the library containing this module. More... | |
| std::string | m_packageName |
| The name of the lib/the package containing this module. More... | |
| Requirements | m_requirements |
| The list of requirements. More... | |
Protected Attributes inherited from WThreadedRunner | |
| boost::thread | m_thread |
| Thread instance. More... | |
| WBoolFlag | m_shutdownFlag |
| Condition getting fired whenever the thread should quit. More... | |
| WBoolFlag | m_isCrashed |
| True whenever an exception is thrown during threadMain. More... | |
| std::string | m_crashMessage |
| The crash message. More... | |
Computes a distance map from an anatomy dataset and renders it as isosurface.
It is a composition of isosurface and the distance map module.
Definition at line 42 of file WMDistanceMapIsosurface.h.
| WMDistanceMapIsosurface::WMDistanceMapIsosurface | ( | ) |
Standard constructor.
Definition at line 42 of file WMDistanceMapIsosurface.cpp.
Referenced by factory().
Here is the caller graph for this function:| WMDistanceMapIsosurface::~WMDistanceMapIsosurface | ( | ) |
Destructor.
Definition at line 57 of file WMDistanceMapIsosurface.cpp.
|
protectedvirtual |
Callback for m_active.
Overwrite this in your modules to handle m_active changes separately.
Reimplemented from WModule.
Definition at line 183 of file WMDistanceMapIsosurface.cpp.
References WModule::m_active, and m_isosurfaceModule.
|
protectedvirtual |
Initialize the connectors this module is using.
Reimplemented from WModule.
Definition at line 151 of file WMDistanceMapIsosurface.cpp.
References WModule::addConnector(), WModule::connectors(), m_input, and m_output.
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virtual |
Due to the prototype design pattern used to build modules, this method returns a new instance of this method.
NOTE: it should never be initialized or modified in some other way. A simple new instance is required.
Reimplemented from WModuleContainer.
Definition at line 61 of file WMDistanceMapIsosurface.cpp.
References WMDistanceMapIsosurface().
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virtual |
Get the icon for this module in XPM format.
Reimplemented from WModule.
Definition at line 66 of file WMDistanceMapIsosurface.cpp.
|
protectedvirtual |
Entry point after loading the module.
Runs in separate thread.
Reimplemented from WModuleContainer.
Definition at line 71 of file WMDistanceMapIsosurface.cpp.
References WModuleContainer::add(), WModuleFactory::getModuleFactory(), m_distanceMapModule, m_input, m_isosurfaceModule, m_isoValueProp, m_opacityProp, m_output, WModule::m_properties, m_surfaceColorProp, m_useTextureProp, WModule::ready(), WModuleContainer::stop(), and WThreadedRunner::waitForStop().
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protectedvirtual |
Initialize requirements for this module.
Reimplemented from WModule.
Definition at line 177 of file WMDistanceMapIsosurface.cpp.
References WModule::m_requirements.
|
friend |
Only UnitTests may be friends.
Definition at line 47 of file WMDistanceMapIsosurface.h.
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private |
The distance map module used in this container.
Definition at line 105 of file WMDistanceMapIsosurface.h.
Referenced by moduleMain().
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private |
Input connector required by this module.
Definition at line 101 of file WMDistanceMapIsosurface.h.
Referenced by connectors(), and moduleMain().
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private |
The isosurface module used in this container.
Definition at line 104 of file WMDistanceMapIsosurface.h.
Referenced by activate(), and moduleMain().
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private |
Property holding the value for the distance.
Definition at line 96 of file WMDistanceMapIsosurface.h.
Referenced by moduleMain().
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private |
Property holding the value for the opacity of the surface.
Definition at line 97 of file WMDistanceMapIsosurface.h.
Referenced by moduleMain().
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private |
Connector to provide the distance map to other modules.
Definition at line 102 of file WMDistanceMapIsosurface.h.
Referenced by connectors(), and moduleMain().
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private |
Property indicating which color to use for non-textured surface.
Definition at line 99 of file WMDistanceMapIsosurface.h.
Referenced by moduleMain().
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private |
Property indicating whether to use texturing with scalar data sets.
Definition at line 98 of file WMDistanceMapIsosurface.h.
Referenced by moduleMain().