Modules

This group contains modules of OpenWalnut. More...

Classes
class	WMAnisotropicFiltering
	This module smoothes images of a dataset while preserving edges. More...
class	WMApplyMask
	Set all voxels in a dataset to zero if the other dataset is zero there. More...
class	WMArbitraryPlane
	Arbitrarily orientable cutting plane through the data. More...
class	WMArbitraryROIs
	Create non uniformly shaped ROIs for fiber selection. More...
class	WMButterfly
	OpenWalnut module that subdivides a triangle mesh in more points resulting a smoother surface. More...
class	WMCalculateHistogram
	Calculates a histogram from WDataSetSingle. More...
class	WMClusterDisplay
	Module offers several fiber selection and coloring options depending on a hierarchical clustering. More...
class	WMClusterDisplayVoxels
	Allows one to display and interact with clustered voxel data. More...
class	WMColormapper
	This module simply registers the given dataset to the texture handling mechanism. More...
class	WMCoordinateSystem
	class that implements the various coordinate systems as overlays within the 3D view More...
class	WMData
	Module for encapsulating WDataSets. More...
class	WMReadSphericalHarmonics
	This module loads spherical harmonics data given as vectors of coefficients from NIfTI files. More...
class	WMWriteNIfTI
	Write the input dataset to a NIfTI file. More...
class	WMDataCreatorFibers
	Module which utilizes the strategy pattern to provide a multitude of dataset creation algorithms for fiber data. More...
class	WMDataCreatorPoints
	Module which utilizes the strategy pattern to provide a multitude of dataset creation algorithms for point data. More...
class	WMDataCreatorScalar
	Module which utilizes the strategy pattern to provide a multitude of dataset creation algorithms for scalar data. More...
class	WMDataCreatorVector
	Module which utilizes the strategy pattern to provide a multitude of dataset creation algorithms for vector data. More...
class	WMDatasetManipulator
	Module allowing manipulation of the dataset scaling, orientation and position. More...
class	WMDatasetProfile
	Someone should add some documentation here. More...
class	WMDataTypeConversion
	Provides a new field with the approximately the same data, but with another data type. More...
class	WMDiffTensorScalars
	Computes a scalar dataset for a given tensor dataset. More...
class	WMDirectVolumeRendering
	This module is a basic volume renderer. More...
class	WMDistanceMap
	Computes a distance map from an anatomy dataset. More...
class	WMDistanceMapIsosurface
	Computes a distance map from an anatomy dataset and renders it as isosurface. More...
class	WMEEGView
	Test module to open a new widget and display EEG data. More...
class	WMEffectiveConnectivityCluster
	This module is able to visualize connectome data in the context of MRI data. More...
class	WMEigenSystem
	Computes the eigensystem of a second order tensor field. More...
class	WMFiberDisplay
	This modules takes a dataset and equalizes its histogram. More...
class	WMFiberFilterIndex
	This module is intended to allow the user to filter a fiber dataset using the current ROI config. More...
class	WMFiberFilterROI
	This module is intended to allow the user to filter a fiber dataset using the current ROI config. More...
class	WMFiberParameterColoring
	This modules takes a dataset and equalizes its histogram. More...
class	WMFiberResampling
	This modules takes a fiber dataset and samples it in regular steps. More...
class	WMFiberSelection
	This module handles selection of fibers based on two volumes of interest. More...
class	WMFibersToPoints
	This modules takes a fiber dataset and extracts its vertices to build a point dataset. More...
class	WMFiberTransform
	Transforms a fiber dataset. More...
class	WMFiberTranslator
	Creates a fiber dataset from various data sources. More...
class	WMFilterProtonData
	This module simply registers a given csv dataset to the csv handling mechanism. More...
class	WMGaussFiltering
	Gauss filtering for WDataSetScalar. More...
class	WMGridRenderer
	Show the bounding box and grid of a WDataSetSingle. More...
class	WMHARDIToSphericalHarmonics
	Module for the creation of a spherical harmonic data set from raw HARDI data. More...
class	WSphericalHarmonicsCoefficientsThread< T >
	Module for the creation of a spherical harmonic data set from raw HARDI data. More...
class	WMHierchClustDisplay
	Module to explore hierarchical parcellations of brain data The module loads a tree file from disk, and allows tree processing, visualization of seed voxel locations onto anatomy image exploration of the hierarchical tree, partition selection, and along with partition2Mesh module the projection of partitions back to the brain surface. More...
class	WMPartition2Mesh
	This module projects a clustering partition result onto a (freesurfer) mesh Meant to work with hierchClustDisplay. More...
class	WMHistogramEqualization
	This modules takes a dataset and equalizes its histogram. More...
class	WMImageExtractor
	This module extracts single images from a dataset. More...
class	WMImageSpaceLIC
	This module takes an vector dataset and used it to apply an image space based (fast) LIC to an arbitrary surface. More...
class	WMImageSpaceTensorLIC
	This module takes a second order symmetric tensor dataset and uses it to apply an image space based (fast) fabric-like LIC to an arbitrary surface. More...
class	WMIsosurface
	Module implementing the marching cubes algorithm with consistent triangulation for data given on regular grids with axis-aligned cells. More...
class	WMIsosurfaceRaytracer
	This module builds the base for fast raytracing of isosurfacesin OpenWalnut. More...
class	WMMergeComponentsToVector
	This modules takes several scalar inputs and merges them to a vector dataset. More...
class	WMMergePoints
	This modules takes some point data and merges them into one new point dataset. More...
class	WMMeshToPoints
	This modules takes a mesh and extracts its vertices to build a point dataset. More...
class	WMNavigationSlices
	This module provides simple slices that can be color-mapped. More...
class	WMOpenIGTLinkSender
	This module provides an interface to OpenIGTLink, a protocol to exchange data remotely over IP networks. More...
class	WMPaintTexture
	Forward declaration of WPickInfo. More...
class	WMPickingDVR
	Allows to select a 3D position in a DVR by selecting a 2D location on the screen. More...
class	WMPickingDVREvaluation
	Someone should add some documentation here. More...
class	WMPointConnector
	This module connects the points in a point dataset. More...
class	WMPointRenderer
	This module renders the points in a point dataset. More...
class	WMProbTractDisplay
	This module generates a visualization of probabilistic tracts using iso surfaces. More...
class	WMProjectionsAsContext
	Computes contour lines (aka isolines) for the given data and render them on a 2D plane. More...
class	WMReadAmiraMesh
	Reader for amiraMesh (.am) files. More...
class	WMReadDipoles
	Someone should add some documentation here. More...
class	WMReadLAS
	This module loads LAS files (point data). More...
class	WMReadMesh
	This module reads a file containing mesh data (several formats supported) and creates a mesh (or triangle mesh) object delivered through the output connector. More...
class	WMReadRawData
	A module to read scalar data stored as array of raw data. More...
class	WMReadSimpleTextLineData
	This module loads simple text-based line data files. More...
class	WMReadVCL
	A module to read VCL line data. More...
class	WMReadVIM
	This module loads VIM files (point data). More...
class	WMResampleRegular
	A module to resample a regular dataset with a different regular grid. More...
class	WMSampleOnFibers
	This modules takes a fiber dataset and samples it at a given parameter value. More...
class	WMScalarOperator
	Operators for processing two WDataSetScalar. More...
class	WMScalarSegmentation
	First version of a module that implements 3D-image segmentation algorithms. More...
class	WMSpatialDerivative
	This modules takes a dataset and derives it spatially. More...
class	WMSplineSurface
	Module implementing the marching cubes algorithm with consistent triangulation for data given on regular grids with axis-aligned cells. More...
class	WMSuperquadricGlyphs
	Rendering of GPU bases Superquadric Glyphs. More...
class	WMSurfaceIllustrator
	This module renders the triangle mesh given at its input connector as a surface. More...
class	WMSurfaceParameterAnimator
	This module is a ray-tracing based isosurface using special methods for animating particle flow on its surface. More...
class	WMTeemGlyphs
	Spherical harmonics glyphs using teem (http://teem.sourceforge.net/). More...
class	WMTemplate
	This module is intended to be a simple template and example module. More...
class	WMTransferFunction1D
	A module to provide 1D transfer functions, e.g., for volume rendering. More...
class	WMTransferFunctionColorBar
	This module simply registers the given dataset to the texture handling mechanism. More...
class	WMTriangleMeshRenderer
	This module renders the triangle mesh given at its input connector as a surface. More...
class	WMVectorAlign
	This module aligns vectors so that they are inside of the same halfspace by just mirroring their directions if necessary. More...
class	WMVectorNormalize
	Operator for normalizing vectors. More...
class	WMVectorOperator
	Operators for processing two WDataSetScalar. More...
class	WMVectorPlot
	Show an glyph plot (in this case the glyphs are arrows) of a vector data set. More...
class	WMVectorScale
	Operators for processing a vector with a WDataSetScalar. More...
class	WMVoxelizer
	Traces a given set of deterministic tracts as given by a dataset of deterministic tracts (optionally only a subset may be processed) in a voxel-wise manner. More...
class	WMWebglSupport
	Someone should add some documentation here. More...
class	WMWriteAmiraMesh
	Someone should add some documentation here. More...
class	WMWriteDendrogram
	This module writes the Dendrogram. More...
class	WMWriteField
	Someone should add some documentation here. More...
class	WMWriteMesh
	This module writes the triangle mesh given at its input connector as a VTK ASCII file or .json file or STL file. More...
class	WMWriteRawData
	A module to read scalar data stored as array of raw data. More...
class	WMWriteTracts
	This module writes the tracts of either a fiber cluster or directly out of a WDataSetFibers at its connector to a file. More...
class	WMWriteTransferFunction
	Module to export transferfunctions. More...
class	WMCalculateGFA
	A module that calculates the generalized fractional anisotropy for every voxel of the input dataset. More...
class	WMCalculateTensors
	A module that calculates tensors from the input SH dataset. More...
class	WMDeterministicFTMori
	This module implements the simple fiber tracking algorithm by Mori et al. More...
class	WMFunctionalMRIViewer
	Views a time series at different points in time. More...
class	WMHistogramView
	A module that draws a histogram. More...
class	WMMultiHistogramView
	A module that draws a histogram of one or mode scalar datasets in a custom widget. More...
class	WMTemplateColormapping
	A module that explains the usage of the WGEColormapping interface including the GLSL codes. More...
class	WMTemplateContainers
	A module that explains re-use and re-combination of existing modules. More...
class	WMTemplateDataLoader
	A module that explains the data loader module interface in OpenWalnut. More...
class	WMTemplateRenderPipelines
	A module that explains the usage of the WGEOffscreen interface including the GLSL codes. More...
class	WMTemplateShaders
	A module that explains the usage of the WGEShader interface. More...
class	WMTemplateUI
	A module that explains the usage of the abstract UI interface in OpenWalnut. More...

Detailed Description

This group contains modules of OpenWalnut.

The term modules can be understood as "plugin" or "algorithm" in this context.